MicroScope User Doc
3.17.4

MicroScope Platform Overview

  • Interface
  • Annotation
  • Technical Requirements
  • Login
  • Latest news
  • Sequence and Genome selection
  • Metadata

MaGe

  • Genome Browser
  • Gene annotation editor
  • Identical gene names
  • Overlapping CDSs
  • EC number Update
  • Annotation Summary
  • Annotation Mapping

Genomic Tools

  • Genome Overview
  • Circular Genome Viewer
  • Tandem Duplications
  • EGGNOG Automatic Classification based on COG categories
  • Minimal Gene Set

Comparative Genomics

  • Genome Clustering
  • Gene phyloprofile
  • Regions of Genomic Plasticity - RGP Finder
  • Regions of Genomic Plasticity - panRGP
  • Lineplot
  • Fusion / Fission
  • PkGDB Synteny Statistics
  • RefSeq Synteny Statistics
  • Pan/Core Genome
  • Resistome
  • Virulome
  • Integron
  • Macromolecular Systems
  • Prophages & Defense Systems

Metabolism

  • MicroCyc
  • Kegg
  • Metabolic Profile
  • Pathway Curation
  • Secondary metabolites

Experimental Data

  • Variant profiling projects
  • RNA-Seq analysis projects
  • Mapping Overview (Variant/RNA-Seq)
  • Read Count Analysis (Variant/RNA-Seq)
  • Differential Expression Analysis (RNA-Seq)
  • Variant analysis

Searches

  • Blast & Pattern Searches
  • Keywords Search Tool
  • Export Data

User Panel

  • Personal Information
  • Display Preferences
  • Gene Carts
  • Genome Carts
  • Register an Account
  • Lost Password?
  • My Genomes
  • Access Right Management
MicroScope User Doc
  • Search

© Copyright 2023. Last updated on Jan 08, 2025.