How to explore a Macromolecular System?

The MacSyFinder System visualization window allows you to access the detailled description of a selected Macromolecular System.

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The table Genomic objects provides information regarding the genomic objects composing the Macromolecular System such as :

  • Label, Begin, End, Gene, Product: correspond to the annotation of the object in MicroScope

  • Gene status: mandatory or accessory, as defined by MacSyFinder

  • MacSy label: gene label proposed by MacSyFinder

  • Eval: e-value of the match with MacSyFinder models

  • Query coverage: coverage of the match on the genomic object

  • Subject coverage: coverage of the match on the MacSyFinder model

  • Begin match: begin position of the match on the genomic object

  • End match: end position of the match on the genomic object

You can export the genes by clicking on Export to Gene Cart.

How to explore a CRISPR?

The table CRISPR Sequences provides all repeats and spacers contained in the selected CRISPR:

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  • Sequence type: CRISPR_dr if the sequence is a direct repeat or CRISPR_spacer if the sequence is a spacer

  • Begin/End: position of the sequence on the replicon

  • Length: length of the sequence

  • Sequence: nucleic acid sequence