How to explore a Macromolecular System?
The MacSyFinder System visualization window allows you to access the detailled description of a selected Macromolecular System.
The table Genomic objects provides information regarding the genomic objects composing the Macromolecular System such as :
Label, Begin, End, Gene, Product: correspond to the annotation of the object in MicroScope
Gene status: mandatory or accessory, as defined by MacSyFinder
MacSy label: gene label proposed by MacSyFinder
Eval: e-value of the match with MacSyFinder models
Query coverage: coverage of the match on the genomic object
Subject coverage: coverage of the match on the MacSyFinder model
Begin match: begin position of the match on the genomic object
End match: end position of the match on the genomic object
You can export the genes by clicking on Export to Gene Cart.
How to explore a CRISPR?
The table CRISPR Sequences provides all repeats and spacers contained in the selected CRISPR:
CRISPR_drif the sequence is a direct repeat or
CRISPR_spacerif the sequence is a spacer
Begin/End: position of the sequence on the replicon
Length: length of the sequence
Sequence: nucleic acid sequence