How to explore a Macromolecular System?¶
The MacSyFinder System visualization window allows you to access the detailled description of a selected Macromolecular System.
The table Genomic objects provides information regarding the genomic objects composing the Macromolecular System such as :
- Label, Begin, End, Gene, Product: correspond to the annotation of the object in MicroScope
- Gene status: mandatory or accessory, as defined by MacSyFinder
- MacSy label: gene label proposed by MacSyFinder
- Eval: e-value of the match with MacSyFinder models
- Query coverage: coverage of the match on the genomic object
- Subject coverage: coverage of the match on the MacSyFinder model
- Begin match: begin position of the match on the genomic object
- End match: end position of the match on the genomic object
You can export the genes by clicking on Export to Gene Cart.
How to explore a CRISPR?¶
The table CRISPR Sequences provides all repeats and spacers contained in the selected CRISPR:
- Sequence type:
CRISPR_dr
if the sequence is a direct repeat orCRISPR_spacer
if the sequence is a spacer - Begin/End: position of the sequence on the replicon
- Length: length of the sequence
- Sequence: nucleic acid sequence