Table of contents
Microscope Platform user documentation.
The MicroScope platform is available at this URL: https://mage.genoscope.cns.fr/microscope.
MicroScope Platform Overview
MicroScope Platform Overview
MaGe
MaGe
- Genome Browser
- Gene annotation editor
- Overview of the annotation editor
- Expert annotation of gene function
- Annotation Rules
- Start
- Compositional features
- Duplications
- E. coli K12
- B. subtilis
- DB of essential genes
- Favourite Genomes
- MaGe/Curated annotations
- Syntonome / Syntonome RefSeq
- Similarities SwissProt / TrEMBL
- UniFIRE
- KOfamScan
- Predicted MetaCyc Pathways
- EGGNOG
- FigFam
- PsortB
- InterProScan
- SignalP
- TMHMM
- AntiSMASH
- LipoP
- dbCAN
- SulfAtlas
- Resistome
- Virulome
- IntegronFinder
- MacSyFinder
- Phigaro
- DefenseFinder
- Identical gene names
- Overlapping CDSs
- EC number Update
- Annotation Summary
- Annotation Mapping
Genomic Tools
Comparative Genomics
Comparative Genomics
Metabolism
Experimental Data
Searches
Searches
- Blast & Pattern Searches
- Keywords Search Tool
- What are Single/Multiple Modes?
- How to read the interface?
- What about the Dataset?
- What are the Fields?
- What are Filters?
- How to read the With / Without keyword fields and their options?
- How to perform a search
- How to refine a search?
- How to read search results?
- How to export and save results in a Gene Cart?
- How to explore within a Gene Cart content?
- What are the Empty/Not Empty Buttons?
- Export Data