Table of contents¶
Microscope Platform user documentation.
The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope.
MicroScope Platform Overview¶
MicroScope Platform Overview
MaGe¶
MaGe
- Genome Browser
- Gene annotation editor
- Overview of the annotation editor
- Expert annotation of gene function
- Annotation Rules
- Start
- Compositional features
- Duplications
- E. coli K12
- B. subtilis
- Essential genes
- Genomes/Project
- MaGe/Curated annotations
- Syntonome / Syntonome RefSeq
- Similarities SwissProt / TrEMBL
- UniFIRE
- PRIAM
- Predicted MetaCyc Pathways
- COGnitor
- EGGNOG
- FigFam
- PsortB
- InterProScan
- SignalP
- TMHMM
- AntiSMASH
- LipoP
- dbCAN
- Resistome
- Virulome
- IntegronFinder
- MacSyFinder
- Identical gene names
- Overlapping CDSs
- EC number Update
- Annotation Summary
- Annotation Mapping
Genomic Tools¶
Comparative Genomics¶
Metabolism¶
Searches¶
Searches
- Blast & Pattern Searches
- Keywords Search Tool
- What are Single/Multiple Modes?
- How to read the interface?
- What about the Dataset?
- What are the Fields?
- What are Filters?
- How to read the With / Without keyword fields and their options?
- How to perform a search
- How to refine a search?
- How to read search results?
- How to export and save results in a Gene Cart?
- How to explore within a Gene Cart content?
- What are the Empty/Not Empty Buttons?
- Export Data
Transcriptomics¶
Variant Discovery¶
User Panel¶
User Panel
- Display Preferences
- Gene Carts
- Gene Cart Overview
- How to move Genomic Objects to another Gene Cart?
- How to copy Genomic Objects to another Gene Cart?
- How to delete Genomic Objects from Gene Cart?
- How to get the intersection between 2 Gene Carts?
- How to get the difference between 2 Gene Carts?
- How to merge 2 Gene Carts?
- How to rename a Gene Cart?
- How to fill a Gene Cart with some Genomic Objects?
- My Favourite Organisms
- Personal Information
- Lost Password?
- Access Rights Management
- Register an Account