Mapping Overview (Variant/RNA-Seq)

Overviewing RNA-Seq or Variant profiling experiments results

This page allows users to have a complete summary of the mapping process for each experiment that have been performed on the studied organism. Results are reported in tables that can be easily expanded/collapsed by clicking on the small horizontal arrow.

An Example is given below in the case of Helicobacter Pylori public data :

../../_images/ov1.png

For each experiment, user will have access to the following data:

  • The total read number;

  • The number of unmapped reads;

  • The number of reads mapped at least once;

  • The number of reads that matched rDNA : Each mapped read is not count once but 1/(number of times mapped on genome);

  • The number of reliable reads (with mapping quality values not null);

  • Nb of reads kept on … : Number of mapped reads against a specific chromosome or plasmid;

  • Total reads mapped on genomic objects (except rRNA) into … : Number of mapped reads except rRNA.