Genome Overview

This page provide multiple data about your organism:

  • Starting with general data (Gram, Taxonomy, genome length …).
  • Then some CheckM analysis results are displayed, to assess the quality of microbial genomes regarding contamination/completion.

Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Research, 25: 1043–1055.

  • And some general statistical data about a replicon, such as: Length, GC%, Ribosomal RNAs, tRNAs types, Annotations Status, Average CDS length, Repeated regions, Average intergenic length , Protein coding density, Scaffolds/Contigs numbers, etc.
../../_images/overview1.PNG ../../_images/overview2.PNG